alexkrohn

That's what I figured. I figured I'd at least make an official suggestion :-)

Alternatively, is there a better way to subset an ipyrad nexus or phylip file to keep sites present in x% of individuals, or all individuals with at least y% non-missing...

If I use `force = True`, all my progress will be lost right? At 16 hours to run the initial tree, and 5 hours per bootstrap, I'd really prefer to...

Got it. Thanks. I'll tag @dereneaton and hope he can chime in.

Bumping this back up! I too would like to use a Word template or to have a UC Berkeley Word template made available. Thanks!

Hi there! I also have questions about this. Firstly, page 45 of the [latest tutorial](https://github.com/thibautjombart/adegenet/files/7034637/tutorial-basics.pdf) says that `pairwise.fst()` is still maintained by adegenet. That should probably be updated if we're...

I actually got it working, but it involved some forcing that I figure is not proper. Let me know if there is a better way. This worked, only because I...

Thanks for the replies. I'm using adegenet 2.1.3 on R 4.1.0. `pairwise.fst` does not appear to be an active function that I can find. Next time I will try `genet.dist()`...

Adding my voice back in again for checkpointing at step 3. This time I'm running a salamander 3RAD dataset of 125 individuals where most individuals have 10-20 million reads, but...

I totally understand that this would be a significant lift. I figured I'd just put it out there that this would still be a useful feature 😃 With a genome...