scSTEM
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Review of scSTEM repo
Overall, it is very easy to install scSTEM using the first option and run it, it is very accessible. I have a few minor comments:
- it would be nice to abstract a few steps by the command line, for example: the download of
lock
file could be done through a command like curl -O file.lock - Also, you can specify the example path only once in the beginning as a variable for example path <- 'home/alex/sctem' and then refer to that variable for the remainder of the tutorial.
- You can also include the installation of the trajectory inference software as a dependency
- Finally, it would be nice to have an example button in the GUI that preloads some toy example data or even real world data.
Fantastic tool overall!