masurca
masurca copied to clipboard
Error: jellyfish not found or failed to run
Thank you for developing great software!
For some reasons, I built 4.1.0 by running install.sh on one workstation. I then moved the built directory to another workstation and tried to run masurca. This workstation has jellyfish installed. I ran the following commands, but kept getting an error caused by jellyfish.
$ MaSuRCA-4.1.0/bin/masurca config.txt -o assemble.sh Verifying PATHS... Error: jellyfish not found or failed to run
At first I thought this error was caused by building on another workstation. Then, after digging through the files, I thought the files stored in the following directories were suspicious.
MaSuRCA-4.1.0/lib/pkgconfig
I rewrote the environment variable prefix written in mummer.pc and jellyfish-2.0.pc included in this directory for the workstation running masurca. This still causes the same error. Why is this?
I had the same issue, solved with following code:
module add Boost
module add Perl
PS: I'm running masurca on a SLURM cluster Best