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Masurca on SLURM

Open aabaricalla opened this issue 2 years ago • 0 comments

Hello!! I'm starting to work with Masurca and I have some questions about the SLURM node usage. I'm currently working with an insect genome that has approximately 1 Gbp in length, sequenced with 2 pair end and 2 mate end Illumina reads (~100X) and a low coverage Pacbio reads (~8X). I'm launching Masurca in a server that has many nodes with 64 threads and 128Gb of ram per node. How should I set the Masurca settings to launch the work on the grid efficiently? unfortunately, there is no high ram node so I need some suggestions to process the data properly.

Thanks in advance!

aabaricalla avatar Jul 14 '22 14:07 aabaricalla