Alessio Buccino

@JulienBrn since Zarr 3.1.0 (3.1.2) is released! I think we can restart the conversation here. I believe that most of the issues related to NWB are fixed, but also orthogonal...

Hi @SusanL82 The max possible clusters is unfortumately not exposed on our side. I could push the change, but as you realized you have to use a previous version of...

Yes, I'll try to do it by the end of the week

I'll start a local build to make sure that everything works smoothly :) We can wait a few days to upload to dockerhub

@JoeZiminski I'm actually going to go ahead and push the containers with the fixes from Marius so we can fix that the issue is solved on our side too.

Done: - https://hub.docker.com/repository/docker/spikeinterface/kilosort2_5-compiled-base/general - https://hub.docker.com/repository/docker/spikeinterface/kilosort3-compiled-base/general

@zm711 I think I'm observing the same! Basically the spike trains seem to be shifted and we also get waveforms that are completely noisy! Is that what you're seeing too?

Yep! Here's an [example](https://figurl.org/f?v=npm://@fi-sci/figurl-sortingview@12/dist&d=sha1://06238ba4129b26d825f23f1a2d67241c9f0aa307&s={%22sortingCuration%22:%22gh://AllenNeuralDynamics/ephys-sorting-manual-curation/main/ecephys_717374_2024-03-15_15-10-01/experiment1_Record%20Node%20101%23Neuropix-PXI-100.46116_recording1/kilosort2_5/curation.json%22}&label=ecephys_717374_2024-03-15_15-10-01%20-%20experiment1_Record%20Node%20101%23Neuropix-PXI-100.46116_recording1%20-%20kilosort2_5%20-%20Sorting%20Summary&zone=aind) from sortingview. The auto correlograms look correct, but waveforms and amplitudes (and so quality metrics etc.) are just noise. Should we comment on the Kilosort issue/repo?

> Yep! Here's an [example](https://figurl.org/f?v=npm://@fi-sci/figurl-sortingview@12/dist&d=sha1://06238ba4129b26d825f23f1a2d67241c9f0aa307&s=%7B%22sortingCuration%22:%22gh://AllenNeuralDynamics/ephys-sorting-manual-curation/main/ecephys_717374_2024-03-15_15-10-01/experiment1_Record%20Node%20101%23Neuropix-PXI-100.46116_recording1/kilosort2_5/curation.json%22%7D&label=ecephys_717374_2024-03-15_15-10-01%20-%20experiment1_Record%20Node%20101%23Neuropix-PXI-100.46116_recording1%20-%20kilosort2_5%20-%20Sorting%20Summary&zone=aind) from sortingview. The auto correlograms look correct, but waveforms and amplitudes (and so quality metrics etc.) are just noise. Should we comment on the Kilosort...

@zm711 @JoeZiminski I deleted the containers with the fix because of the misalignment bug. Now we're back to the spike holes version for KS2.5 and KS3, which is the lesser...