methylKit icon indicating copy to clipboard operation
methylKit copied to clipboard

Published 20 hours ago • verified publisher icon al2na

destranding in chunks can result in duplicate rows

Open alexg9010 opened this issue 2 years ago • 0 comments

This has something to do with the destranding part of the unite function. For destranding we are processing the methylRawDB in chunks and I assume that somehow the strand-paired cytosines could be included in non-overlapping chunks.

To mitigate this we should run destranding by chromosomes.

Originally posted by @alexg9010 in https://github.com/al2na/methylKit/issues/129#issuecomment-555446990

alexg9010 avatar Feb 21 '22 13:02 alexg9010