methylKit
methylKit copied to clipboard
Be more explicit about assocComp()$association meaning
When talking about the batch correction (https://github.com/al2na/methylKit/blob/ab60a62e0bd610718fcbb76e9505957c8c3ec15f/vignettes/methylKit.Rmd#L360-L369), we should probably be more explicit about the output of assocComp()
(https://github.com/al2na/methylKit/blob/ab60a62e0bd610718fcbb76e9505957c8c3ec15f/R/batchControl.R#L180-L185).
This recent issue (https://github.com/al2na/methylKit/issues/247 ) shows that people might not be aware that the association
component contains p-values, thus should not be interpreted as percentages of association or similar.
I suggest renaming the list item to something more explicit, like association_test
or association_pval
.