Aki Hoji

Hi @SabrinaITNL, my issue was solved by providing the right matrix file.

@yyc4217, A following is the line I used to run Velocyte; `velocyto run -b filtered_feature_bc_matrix/barcodes.tsv -o /temp/home -m GRCh38_rmsk.gtf cellsorted_PBMC.bam.bam refdata-gex-GRCh38-2020-A/genes/genes.gtf` My issue was not using the right barcodes.tsv. I...

@colindaven , I am having the issue with -lomp. libomp-dev is installed but for some reasons, installer cant see it. Could you tell me about your libomp-dev and SHLIB_OPENMP_CFLAGS setup...

Twogee, Could you explain what makes following commands different from just jsgillen1's ? > ln -s /Library/Perl # (works as well) > open /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg

Hi Frederick, I tried with or without Jitter.shjape but I am still getting out line points. If I do; ``` > ggplot(tmp, aes(x =Cluster, y = mean.scaled.GlcCer.total)) + + geom_boxjitter(...

@raamana, Thanks for considering. Its just that my main analysis platform is R and so do my colleagues. I do run python in R or Jupyter when it is necessary...

@seanlaw, So warning is gone by using what you suggested but this still crushes python/jupyter kernel on M1 Mac mini running the latest 12.5.

@Saskia-vA, this issue has not been addressed but have you figure the way around of this issue ? Thanks.

@Saskia-vA yeah, I decided to use circlize as well. Could you kindly enough to share your code by using circlize to draw the plot in question ? Thanks.

@heuermh Can you try xz --best -T0 and see how fast it is ?