Åke Sandgren

One drawback with separate cpu and gpu submit files is that the user will have to explicitly change the path to the submit file template in the gui when switching...

The template problem comes when using the GUI. The path to the template file is saved in the session files for the relion setup. So when they go from foss...

Remember that the preconfigopts gets shipped to /bin/sh, you need to escape them correctly.

So, we will stick to using the add_hpc2n_submit_file_args.patch.

Also note that the sed cmd you're using doesn't quite match what the patch is doing.

One quick note on LAPACK testing. It is imperative to compile things under TESTING and MATGEN with -O0. Otherwise compilers are likely to introduce errors where there are none... and...

Kicking travis now that the deps re in place

Travis kicked

I'll make a rebuild of these and verify things like TBB and the CPU builds performance.

@verdurin Personally I do, but there is still the matter of the rather site specific patch. I think it would be good to have some consensus on that before merging....