CaSpER icon indicating copy to clipboard operation
CaSpER copied to clipboard

generateAnnotation returning curl error

Open Lakshya3141 opened this issue 4 years ago • 2 comments
trafficstars

Hi! I was following the tutorial for 10X scRNA data given. All the steps ran perfectly uptil the following snippet: annotation <- generateAnnotation(id_type="hgnc_symbol", genes=genes, centromere=centromere, ishg19 = T) Which constantly returns the error: Batch submitting query [=========================================================>-------------------] 75% eta: 4sError in curl::curl_fetch_memory(url, handle = handle) : transfer closed with outstanding read data remaining Upon a cursory read, it seems that this occurs when the data is incomplete and hence curl stops procuring it. In most cases where people obtained errors like this, it was resolved by using http or changing the wait time. That would require me to go through and modify CaSpER, which I am not comfortable with. Are there any other ways to resolve this perhaps? PS. All my packages are up to date

Lakshya3141 avatar Sep 20 '21 07:09 Lakshya3141

I have similar problem. I would like to know whether we could download the annotation file from the websites and incorporate it locally?

Junedays avatar May 05 '24 00:05 Junedays

I have solved this problem. We can just change to another host. like : useast.ensembl.org

Junedays avatar May 05 '24 02:05 Junedays