Error in if (abs(loglik[i] - loglik[i - 1]) < 0.1 || loglik[i] < loglik[i - : missing values where TRUE/FALSE values are required

[wqy399]

When runCasper, I got this erro: Error in if (abs(loglik[i] - loglik[i - 1]) < 0.1 || loglik[i] < loglik[i - : missing values where TRUE/FALSE values are required. Would you please help me to fugure out?

[wqy399]

10 genomics data was used.

[Troyee13]

Yes I 'm also facing this same problem. Please suggest.

[Gonysh]

Me too

[hongjianjin]

I used bulk data. Had exact same error. But able to run toy example successfully. After checking my code, I found that colnames(data) don't match loh.name.mapping$loh.name . That solved my problem like this.