snipit
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aineniamh
snipit: summarise snps relative to your reference sequence
Hello I installed snipit with pip but it does not seem to have all the options (notably the most recent ones like --sequence-type. can you advise? thank you! ``` snipit...
Dear @aineniamh, Thank you for developing such a great project. When I'm conducting SNP analyzing, the typical scenario is that: align the second-generation sequencing data to the reference genome, then...
Dear @corneliusroemer @aineniamh, I would like to plot like the figure below, is this possible using snipit?
This is a great tool for visualsing nucleotide changes, thanks for making it available to the community! A related use case would be to visualise amino acid changes vs a...
Hello @aineniamh, I have been using this program and so far I love it. I also like the idea of exporting a CSV file with all the SNPs detected. I'm...
a couple of observations for the current version: - --sort-by-mutations is broken (fix in #24) - code in master branch has `__version__` set to 1.1, but pypi version has 1.1.2...
Hi, I love this program! One suggestion: The coordinates on top show the position in the alignment, and it would be lovely if they could show the position in the...
Hello! Loving snipit so far! However, I have noticed that the `--flip-vertical` option doesnt seem to be working. When I add this flag, the output image file is in the...
Hi @aineniamh I am trying to figure out how to use the code. Would you please provide me the code to run in Pycharm? Thanks Aria
I foresee frequent use of this tool. Looks nice! Any chance you can make it available via conda?
