lift-input-annotations-to-asm-annotations.awk 2D annotation file

[chun-he-316]

Hello! I want to use 3d-dna-master/lift/lift-input-annotations-to-asm-annotations.awk to map my annotation file from input onto the assembly chromosome according to a particular asm and cprops file, but I do not know what 2D annotation file is. I just have gff3 file of genome. Can you tell me how to obtain a 2D annotation file? Thanks.

Description: Script to map 2D annotation files from input onto the assembly chromosome according to a particular asm and cprops file.

Usage: awk -v scale= -f remap-input-annotations-to-asm-annotations.awk

Input: Cprops file, asm file and 2D annotation file (0-based, 12-column tab-separated assembly format).

Output: 2D annotation file STDOUT (0-based, 12 column tab-separated assembly format).