3d-dna icon indicating copy to clipboard operation
3d-dna copied to clipboard

lift-input-annotations-to-asm-annotations.awk: line 108: regular expression compile failed (syntax error ^* or ^+)

Open chun-he-316 opened this issue 2 years ago • 0 comments

Hi I tried to run 3d-dna/run-asm-pipeline.sh script with merged_nodups.txt generated from juicer. After it is running, appear an awk syntax error: ...visualizing round 0 results: :) -p flag was triggered. Running with GNU Parallel support parameter set to false. :) -q flag was triggered, starting calculations for 1 threshold mapping quality :) -i flag was triggered, building mapq without :) -c flag was triggered, will remove temporary files after completion ...Remapping contact data from the original contig set to assembly ...Building track files awk: /data/hechun/software/3d-dna-master/lift/lift-input-annotations-to-asm-annotations.awk: line 108: regular expression compile failed (syntax error ^* or ^+) Please tell me how to resolve it. Thanks

chun-he-316 avatar Sep 14 '22 03:09 chun-he-316