Ahmad Al Ajami

Running kallisto(bustools) on amplicon-based (targeted panel) BD Rhapsody scRNA-seq data

10

Hi, I am trying to run an amplicon-based (not WTA; targeted panel) BD Rhapsody scRNA-seq data using kallisto/kallistobustools. However, I can see that only BDWTA is supported. I used the...

Mapping Sample Tags to Cellular Barcodes

5

Hi there, I am trying to run an amplicon-based (targeted panel) BD Rhapsody scRNA-seq data using kallisto/kallistobustools. Is there a way to map sample tags to cellular barcodes in order...

Is it possible to create a pseudobam file with kallistobustools (kb)?

6

Hello again, I am running kallistobustools (`kb`) on BDWTA dataset (mainly, `kb ref` and `kb count`). I was wondering if it is possible to obtain a pseudobam file similar to...