Ahmad Al Ajami

Hi @Yenaled, Thank you very much for your quick reply - was very helpful! I managed to run it and output the count matrix, however, one thing I do not...

Thank you for the information. I have obtained the whitelist from BD before and been trying to run `kb` using it from the beginning. I used the unfiltered matrix now...

Similar, yes, but not exactly the same number of entries. Each barcode is indeed 27bp long. I am attaching my whitelist.txt for the sake of completeness. I will filter out...

Yes, that's exactly what I noticed as well. It's hard to know how Seven Bridges does filtering as it is not open source. Anyhow, moving forward, I will use a...

Hi @Yenaled, I thought you might be interested to see this: I examined the knee plot of `kb`'s unfiltered matrix and accordingly, retained only those with > 1000 total UMI...

They are in the R2 file

Yes! I received the SampleTagSequences fasta file from BD this morning and was able to find them in R2 using the `grep` command