fastx_toolkit
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agordon
FASTA/FASTQ pre-processing programs
Build fails under clang 6 due to #pragma pack change during compilation. We could either build everything with -fpack-struct=1 or restore default packing size after the struct def as shown...
Excuse me, I have a question that I would like answered. I built this software under the arm architecture, but when I tested it, I found that its output file...
Excuse me , does fastx_toolkit provide official test cases?
Hi to all! I am trying to replicate some results from an article and here the authors claim that they use **fastx_quality_filter + fast_trimmer** with paired end reads. I am...
I am trying to translate ONT Minion reads from fastq to fasta but get the following error `fastq_to_fasta: Error: invalid quality score data on line 19124 (quality_tok = "+"` Any...
Line 105: usage(); should be followed by "exit();" Otherwise, compilation fails on Ubuntu 18.04 with message: fasta_formatter.cpp:105:9: error: this statement may fall through [-Werror=implicit-fallthrough=] usage(); ~~~~~^~ fasta_formatter.cpp:107:3: note: here case...
Newer gcc's warn/error on the implicit fallthough. Add a break to make the intent clear. This was also mentioned in #14.
Hi, when I run the command ``` fastx_quality_stats -i input.fastq -o output.stats ``` , where `input.fastq` consists of ``` @0 A + ] @1 A + ] ``` , then...
The installation of fastx_toolkit 0.0.14 installs m4 macros into $prefix/share/aclocal. It seems wrong to install these files when they are not actually needed at runtime.
