Anthony Gitter

[REFORMS: Reporting Standards for Machine Learning Based Science](https://arxiv.org/abs/2308.07832)

We could now update to [The Carpentries Workbench](https://carpentries.org/blog/2022/01/live-lesson-infrastructure/)

One paper we can consider is [Supervised classification enables rapid annotation of cell atlases](https://www.nature.com/articles/s41592-019-0535-3). They use a very simple classifier (multi-class logistic regression) for a topical biological problem of cell...

@cmilica we discussed how it was somewhat difficult to find example applications that use decision trees instead of random forests. This paper suggests that at least some new work may...

I like this website very much. I can see it being broadly useful even outside the ml4bio workshop. We'll have to think about when or how to incorporate this into...

I found this paper to be pretty exciting because it is the same field our group is working in. I think most people can understand the need for new classes...

@cmilica the carpentry workshops are typically designed as in person workshops. Workshop instructors collaborate on the materials. Participants can access those materials and follow along as the instructors lead the...

We can review the carpentries template https://github.com/carpentries/workshop-template as we consider adopting their format. Most carpentries workshops are designed around command line operations (bash, Python, R, etc.). We will need to...

Thanks @sstevens2. What's your opinion on the suitability of this machine learning "concepts" and "literacy" focused workshop in the Carpentries format? Our approach is atypical because we don't actually recommend...

The workshop lessons at https://carpentries.github.io/lesson-example/ can guide us into what it would take to set up this workshop in Carpentries format and what features it would offer. In particular, the...