Ali Ghayoor

ENH: Added bash script for ANTs tissue segmentation

9

ANTs Atropos and antsAtroposN4.sh need all the priors already warped to the subject space before the segmentation is run. This developed script combines the registration step with antsAtroposN4 run. This...

Fails to find DWI pairs

15

Hi developer team, I am trying to run QSIPrep on some PPMI data. In their acquisition set up, they have acquired two sessions of DWI data in opposite phase encoding...

The output FA image shows too many high value spots

2

Hi team, I ran the qsiprep with `--recon_spec dsi_studio_gqi`. Here is the full command line: > qsiprep-docker $datadir/BIDS/ $outdir participant --recon_spec dsi_studio_gqi --participant-label 01 --output-resolution 2 --fs-license-file ./fs_license.txt --verbose --verbose...

Run time error of DTIPrep because of a missed shared library

9

I cloned the latest version of DTIPrep (975ed3d9653a785f96405ad96da6bd1f443d59e6) and built it on a Mac OS X 10.10.4 using default cmake parameters except that I turned off USE_DTIProcess. The build was...