Adrian Bondy

You are describing the same issue previously discussed here: https://github.com/MouseLand/Kilosort/issues/29 There is no perfect solution, but that thread provides some workarounds.

In your Kilosort config file, you could try lowering the value of ops.minFR to near or equal to zero. The default value is 1/50 which means that if a template's...

I'm not familiar with sorting spikes based on previously defined templates, sorry. But it sounds like you are on the right track! Too bad lowering ops.minFR didn't seem to help.

A GPU is required, and there is no plan to change this. See: https://github.com/MouseLand/Kilosort/issues/47

OK, I'm still new to Julia but I think I have a better understanding of the problem now, and it is (I think) rather simpler than I thought. The problem...

That's a shame! Working with proprietary software has definite downsides. Now that I've figured this out, I can scrape by as long as I keep my variables simple.

ok thanks!

We also ran into this issue with Kilosort 2, but ONLY when non-default batch sizes are used. See screenshot for sorting results with batch size ~5s. I can confirm that...

Sorry, I should have been more clear. What I mean is best illustrated by this example panel from the feature window. What you see here is that JRClust has identified...

This would be a very useful feature imo!