André F. Rendeiro

Just reporting that building deepgraph on Python 3.11 fails with: ``` deepgraph/_triu_indices.c:215:12: fatal error: longintrepr.h: No such file or directory 215 | #include "longintrepr.h" | ^~~~~~~~~~~~~~~ compilation terminated. error: command...

Set PEP440 compatible version string

1

To build wheels for `cytomine-python-client` a PEP 440-compatible version string is needed. The current 'x.x.x' string in setup.py does not comply with this. Please consider automatic versioning for example with...

Missing import for rbf kernel?

1

I get a `NameError` ( global name 'rbf_kernel' is not defined) when trying to use the rbf kernel (`affinity='rbf'`). Maybe this is missing an import from sklearn (`sklearn.metrics.pairwise.rbf_kernel`) to be...

Add all required arguments as pipelines inputs

2

This should ease the requirement to use the pipelines with looper (through the sample yaml). Passed arguments in command line should overwride any passed in the sample yaml if this...

Referencing python package files as paths in PEP

5

I propose a new type of string substitution in a PEP that is capable of referencing files existing inside a Python package. Take for example a PEP produced with `geofetch`....

Prohibit, circumvent or warn about setting object variables which are @properties

2

Some attributes of the `Project` class were changed to a `@property`. The user should be prohibited (raise error) or warned about this when trying to `setattr` on this type of...

customize conditional deletions for specific competing pipeline flags

2

I was running two pipelines in the same directory/sample and when one finished, it noticed the flag of the other (even though it is named diferently) and did not clean...

API

2

Thanks for this, looks great! Don't know if you guys want to go that way but I think it would be terrific it LOLAweb would allow programmatic access through something...