afadda91
afadda91
yes would be great if the table in LeafViz can be exported and can the list can be prioritized based on PSI. We need to share these data with biologists....
Here’s the command java -jar ../build/Kourami.jar /Applications/kourami-0.9.6/test/0200172730_on_KouramiPanel.bam -d /Applications/kourami-0.9.6/db -o 0200172730 -a A Input bam : A DOES NOT exist. Please check the bam exists. Exitting . . . When...
Yes its WGS of 30x. Attached is the results file. Thanks From: Heewook Lee Reply-To: Kingsford-Group/kourami Date: Tuesday, November 20, 2018 at 8:45 PM To: Kingsford-Group/kourami Cc: Abeer Fadda ,...
A*24:02:01G 546 1.0 546 546 18.0 9.0 9.0 A*24:02:01G 546 1.0 546 546 18.0 9.0 9.0 B*50:01:01G 546 1.0 546 546 22.0 11.0 11.0 B*50:01:01G 546 1.0 546 546 22.0...
hs37 From: Heewook Lee Reply-To: Kingsford-Group/kourami Date: Wednesday, November 21, 2018 at 9:45 AM To: Kingsford-Group/kourami Cc: Abeer Fadda , Author Subject: Re: [Kingsford-Group/kourami] typing additional loci (#20) They are...
I meant hs38HD. I had to realign to use Kourami. From: Heewook Lee Reply-To: Kingsford-Group/kourami Date: Wednesday, November 21, 2018 at 9:45 AM To: Kingsford-Group/kourami Cc: Abeer Fadda , Author...
/Applications/samtools-1.9/samtools view -H /Users/afadda/Documents/MODY_family/0200172730_hs38HD_sorted.bam @HD VN:1.6 SO:coordinate @SQ SN:chr1 LN:248956422 @SQ SN:chr2 LN:242193529 @SQ SN:chr3 LN:198295559 @SQ SN:chr4 LN:190214555 @SQ SN:chr5 LN:181538259 @SQ SN:chr6 LN:170805979 @SQ SN:chr7 LN:159345973 @SQ SN:chr8...
/Applications/samtools-1.9/samtools view -c /Users/afadda/Documents/MODY_family/0200172730_hs38HD_sorted.bam 779221277 You probably wanted to know if my genome contains HLA sequence. Here’s the rest of the samtools view –H SN:HLA-A*01:01:01:01 LN:3503 @SQ SN:HLA-A*01:01:01:02N LN:3291 @SQ...
Dear, Did you figure out the issue of not having more genes typed with 30x coverage? We’re interested in running your tool on thousands of such data, and would like...
Hi, I would appreciate if you took the time to look into this. It’s very important! Thanks you [cid:43784F07-9918-4382-A6A4-300143ED58AD] Abeer Fadda, PhD Staff Scientist, Bioinformatics, Systems Biology Division t. +974...