pycisTopic label transfer failure

[hshcao]

Describe the bug Hi @SeppeDeWinter and others,

the 'label transfer' step did not go through when i run scenicplus for pycisTopic, I followed the tutorial here: (https://pycistopic.readthedocs.io/en/latest/notebooks/human_cerebellum.html) I run scenicplus on my own GPU server, which is a standalone server, not on a HPC. the labels are from scanpy, which was run following the tutorial here: https://pycistopic.readthedocs.io/en/latest/notebooks/human_cerebellum.html

Another question: this label transfer are needed for running the scenic+ Snakemake, right? or the Snakemake has some other ways of transferring labels?

Thanks

To Reproduce label_dict = label_transfer( rna_anndata, atac_anndata, labels_to_transfer = ['Seurat_cell_type'], variable_genes = True, methods = ['ingest', 'harmony', 'bbknn', 'scanorama', 'cca'], return_label_weights = False, _temp_dir= '/scratch/leuven/330/vsc33053/ray_spill/' )

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Version (please complete the following information):

• Python: Python 3.11.9
• SCENIC+: [e.g. 0.1.dev40+g4ff5053.d20210520]
• If a bug is related to another module [e.g. matplotlib 3.3.9]

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