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could not find function "AUCell_run"

Open Jiayi-Zheng opened this issue 1 year ago • 2 comments

Hello, I was trying AUCell with R and:

> library(AUCell)
> cells_AUC <- AUCell_run(exprMatrix, geneSets, aucMaxRank=nrow(cells_rankings)*0.05)
Error in AUCell_run(exprMatrix, geneSets, aucMaxRank = nrow(cells_rankings) *  : 
  could not find function "AUCell_run"
> ls("package:AUCell")
 [1] "AUCell_buildRankings"     "AUCell_calcAUC"           "AUCell_createViewerApp"   "AUCell_exploreThresholds" "AUCell_plotHist"         
 [6] "AUCell_plotTSNE"          "aucellResults"            "cbind"                    "getAssignments"           "getAUC"                  
[11] "getRanking"               "getSetNames"              "getThresholdSelected"     "nGenes"                   "orderAUC"                
[16] "plotEmb_rgb"              "plotGeneCount"            "plotTsne_cellProps"       "rbind"                    "setGeneSetNames"         
[21] "subsetGeneSets"           "updateAucellResults"

Jiayi-Zheng avatar Mar 11 '23 12:03 Jiayi-Zheng

The same problem here. Do you have a solution?

crotoc avatar Jul 24 '23 16:07 crotoc

I updated to 1.22 and it works

crotoc avatar Jul 24 '23 17:07 crotoc