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Published 20 hours ago • verified publisher icon aeon-toolkit

[MNT] Bump the python-packages group across 1 directory with 6 updates

Open dependabot[bot] opened this issue 6 months ago • 0 comments

Updates the requirements on numpy, pandas, scipy, matplotlib, keras and sphinx to permit the latest version. Updates numpy to 2.0.1

Release notes

Sourced from numpy's releases.

v2.0.1

NumPy 2.0.1 Release Notes

NumPy 2.0.1 is a maintenance release that fixes bugs and regressions discovered after the 2.0.0 release. NumPy 2.0.1 is the last planned release in the 2.0.x series, 2.1.0rc1 should be out shortly.

The Python versions supported by this release are 3.9-3.12.

NOTE: Do not use the GitHub generated "Source code" files listed in the "Assets", they are garbage.

Improvements

np.quantile with method closest_observation chooses nearest even order statistic

This changes the definition of nearest for border cases from the nearest odd order statistic to nearest even order statistic. The numpy implementation now matches other reference implementations.

(gh-26656)

Contributors

A total of 15 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • @​vahidmech +
  • Alex Herbert +
  • Charles Harris
  • Giovanni Del Monte +
  • Leo Singer
  • Lysandros Nikolaou
  • Matti Picus
  • Nathan Goldbaum
  • Patrick J. Roddy +
  • Raghuveer Devulapalli
  • Ralf Gommers
  • Rostan Tabet +
  • Sebastian Berg
  • Tyler Reddy
  • Yannik Wicke +

Pull requests merged

A total of 24 pull requests were merged for this release.

  • #26711: MAINT: prepare 2.0.x for further development
  • #26792: TYP: fix incorrect import in ma/extras.pyi stub
  • #26793: DOC: Mention '1.25' legacy printing mode in set_printoptions
  • #26794: DOC: Remove mention of NaN and NAN aliases from constants

... (truncated)

Commits
  • 4c9f431 Merge pull request #27000 from charris/prepare-2.0.1
  • 0e70e00 REL: Prepare for the NumPy 2.0.1 release [wheel build]
  • 4d10ffc Merge pull request #26995 from charris/backport-26985
  • 764b667 BUG: Add object cast to avoid warning with limited API
  • 9be6ad6 Merge pull request #26971 from charris/backport-26935
  • 6d950e9 BUG: fix f2py tests to work with v2 API
  • 89630c0 Merge pull request #26962 from charris/backport-26919
  • 88fa840 TST: Apply test suggestion by Nathan for rlstrip fixes
  • a9da01e BUG,MAINT: Fix utf-8 character stripping memory access
  • 6afbbf8 Merge pull request #26963 from charris/backport-26930
  • Additional commits viewable in compare view

Updates pandas to 2.2.2

Release notes

Sourced from pandas's releases.

Pandas 2.2.2

We are pleased to announce the release of pandas 2.2.2. This release includes some new features, bug fixes, and performance improvements. We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.2.2 supports Python 3.9 and higher.

The release will be available on the defaults and conda-forge channels:

conda install pandas

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

Updates scipy to 1.14.0

Release notes

Sourced from scipy's releases.

SciPy 1.14.0 Release Notes

SciPy 1.14.0 is the culmination of 3 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.14.x branch, and on adding new features on the main branch.

This release requires Python 3.10+ and NumPy 1.23.5 or greater.

For running on PyPy, PyPy3 6.0+ is required.

Highlights of this release

  • SciPy now supports the new Accelerate library introduced in macOS 13.3, and has wheels built against Accelerate for macOS >=14 resulting in significant performance improvements for many linear algebra operations.
  • A new method, cobyqa, has been added to scipy.optimize.minimize - this is an interface for COBYQA (Constrained Optimization BY Quadratic Approximations), a derivative-free optimization solver, designed to supersede COBYLA, developed by the Department of Applied Mathematics, The Hong Kong Polytechnic University.
  • scipy.sparse.linalg.spsolve_triangular is now more than an order of magnitude faster in many cases.

New features

scipy.fft improvements

  • A new function, scipy.fft.prev_fast_len, has been added. This function finds the largest composite of FFT radices that is less than the target length. It is useful for discarding a minimal number of samples before FFT.

scipy.io improvements

  • wavfile now supports reading and writing of wav files in the RF64 format, allowing files greater than 4 GB in size to be handled.

scipy.constants improvements

  • Experimental support for the array API standard has been added.

... (truncated)

Commits
  • 87c4664 REL: SciPy 1.14.0 rel commit [wheel build]
  • ac63c81 Merge pull request #21019 from tylerjereddy/treddy_1.14.0_final_backports
  • 541003f DOC: update 1.14 relnotes [wheel build]
  • a08d1ff MAINT: stats.gstd: warn when an observation is <= 0
  • a4f7119 DEP: special.perm: deprecate non-integer N and k with exact=True (#20909)
  • 73339fb TST: stats: fix use of np.testing to compare xp-arrays
  • 0542df6 DOC: Update 1.14.0 release notes
  • f8e530c STY: _lib._util: silence mypy
  • e2cbda2 TST:sparse.linalg: Skip test due to sensitivity to numerical noise
  • 4fb2e6a TST: robustify test_nnls_inner_loop_case1
  • Additional commits viewable in compare view

Updates matplotlib to 3.9.1.post1

Commits
  • 9c9792a DOC: Add Zenodo DOI for 3.9.1
  • 60bfa22 BLD: bump branch away from tag
  • 44be14c REL: 3.9.1
  • 5325425 DOC: Create release notes for 3.9.1
  • 568a039 Merge pull request #28507 from meeseeksmachine/auto-backport-of-pr-28430-on-v...
  • 7fa9f24 Merge pull request #28506 from meeseeksmachine/auto-backport-of-pr-28451-on-v...
  • 06189c2 Backport PR #28430: Fix pickling of AxesWidgets.
  • c43313a Backport PR #28451: Fix GTK cairo backends
  • 560fdc4 Merge pull request #28499 from meeseeksmachine/auto-backport-of-pr-28498-on-v...
  • 5552302 Backport PR #28498: Don't fail if we can't query system fonts on macOS
  • Additional commits viewable in compare view

Updates keras to 3.4.1

Release notes

Sourced from keras's releases.

Keras 3.4.1

This is a minor bugfix release.

Commits

Updates sphinx to 8.0.2

Release notes

Sourced from sphinx's releases.

Sphinx 8.0.2

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Changelog

Sourced from sphinx's changelog.

Release 8.0.2 (released Jul 30, 2024)

Bugs fixed

  • Fix the pygments.Formatter.__class_getitem__ patch. Patch by Adam Turner.

Release 8.0.1 (released Jul 30, 2024)

Bugs fixed

  • Patch pygments.Formatter.__class_getitem__ in Pygments 2.17. Patch by Adam Turner.

Release 8.0.0 (released Jul 29, 2024)

Dependencies

  • #12633: Drop Python 3.9 support.

Incompatible changes

.. rst-class:: compact

  • Remove deprecated functions from sphinx.util:

    • Removed sphinx.util.path_stabilize (use sphinx.util.osutil.path_stabilize).
    • Removed sphinx.util.display_chunk (use sphinx.util.display.display_chunk).
    • Removed sphinx.util.status_iterator (use sphinx.util.display.status_iterator).
    • Removed sphinx.util.SkipProgressMessage (use sphinx.util.display.SkipProgressMessage).
    • Removed sphinx.util.progress_message (use sphinx.util.display.progress_message).
    • Removed sphinx.util.epoch_to_rfc1123 (use sphinx.http_date.epoch_to_rfc1123).
    • Removed sphinx.util.rfc1123_to_epoch (use sphinx.http_date.rfc1123_to_epoch).
    • Removed sphinx.util.save_traceback (use sphinx.exceptions.save_traceback).
    • Removed sphinx.util.format_exception_cut_frames

... (truncated)

Commits

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dependabot[bot] avatar Aug 12 '24 01:08 dependabot[bot]