pathling
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aehrc
Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.
Bumps [@babel/preset-typescript](https://github.com/babel/babel/tree/HEAD/packages/babel-preset-typescript) from 7.23.3 to 7.24.1. Release notes Sourced from @babel/preset-typescript's releases. v7.24.1 (2024-03-19) :bug: Bug Fix babel-helper-create-class-features-plugin, babel-plugin-proposal-decorators #16350 Fix decorated class computed keys ordering (@JLHwung) #16344 Fix decorated...
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Bumps [@types/fhir](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/fhir) from 0.0.35 to 0.0.41. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) You can trigger a rebase of this PR by commenting `@dependabot rebase`. [//]: #...
Bumps [typescript](https://github.com/Microsoft/TypeScript) from 4.9.5 to 5.4.5. Release notes Sourced from typescript's releases. TypeScript 5.4.5 For release notes, check out the release announcement. For the complete list of fixed issues, check...
Bumps [ts-node](https://github.com/TypeStrong/ts-node) from 10.9.1 to 10.9.2. Release notes Sourced from ts-node's releases. Fix tsconfig.json file not found Fixed Fixed tsconfig.json file not found on latest TypeScript version (TypeStrong/ts-node#2091) Commits 057ac1b...
Resolves #1784
It would be great if there was a bulk FHIR client implementation within Pathling. This client would be accessible through the library API, so that you could configure and run...
**Describe the bug** We create resources that set both `Reference.reference` and `Reference.identifier` for references to `Patient` and `Encounter` resources. For example: ```json { "resourceType": "Condition", "id": "123", "subject": { "reference":...
Hello, I'm following the instructions at https://github.com/kind-lab/mimic-fhir/blob/main/tutorial/mimic-fhir-tutorial-pathling.ipynb to import the MIMIC-IV FHIR ndjson into Pathling using the docker image here: https://hub.docker.com/r/aehrc/pathling. When running the following script: ```python from pathlib import...
We currently have a number of deployment targets, including: - Maven Central - PyPI - Docker Hub - S3 for benchmark results The use of [environments](https://docs.github.com/en/actions/deployment/targeting-different-environments/using-environments-for-deployment) would help to keep...
It would be great if we could make the server configurable to run a bulk export and import job on a schedule. This would remove the need for the current...