plot(breakaway(frequencytablelist[[1]])) gives NULL

[Leran10]

Hi,

I'm trying to plot the breakaway() function but I got NULL:

> plot(breakaway(frequencytablelist[[1]]))
NULL

I tried the toy_otu_table and it worked well. I'm wondering if there is anything wrong with my breakaway(frequencytablelist[[1]]) result?

> breakaway(frequencytablelist[[1]])
Estimate of richness from method breakaway:
  Estimate is 44
 with standard error 0.21
  Confidence interval: (44, 44)
  Cutoff:  10

Thanks! Leran

[adw96]

Thanks, Leran. Can you show us the output of

frequencytablelist[[1]]

? Then we can diagnose and fix if needed.

[Leran10]

Thanks for your reply! Here is the result:

> frequencytablelist[[1]]
   index frequency
1      2         1
2      3         3
3      4         2
4      5         1
5      6         1
6      7         2
7      8         2
8      9         2
9     10         1
10    11         3
11    13         1
12    15         3
13    16         1
14    18         1
15    20         2
16    22         1
17    23         1
18    25         1
19    26         1
20    33         1
21    38         1
22    39         1
23    48         1
24    80         1
25    91         1
26   162         1
27   239         1
28   249         1
29   294         1
30   791         1
31  1262         1
32  1637         1
33  1878         1

[padpadpadpad]

I am also having this issue.

breakaway version 4.8.4. Interestingly the example on the GetStarted vignette runs fine.

My example freq table is: (yes I know I may have too many singletons right now)!

Var1	Freq
1	5648
2	1557
3	703
4	390
5	262
6	215
7	167
8	119
9	71
10	64
11	56
12	56
13	45
14	31
15	38
16	22
17	20
18	21
19	25
20	18
21	15
22	12
23	22
24	7
25	9
26	14
27	12
28	15
29	6
30	8
31	9
32	7
33	8
34	5
35	5
36	9
37	2
38	3
39	8
40	3
41	7
42	5
43	2
44	2
45	4
46	2
47	2
49	2
50	1
51	1
52	1
53	2
54	1
55	1
56	3
57	1
58	1
60	2
61	1
62	2
63	2
64	1
65	3
66	2
67	1
68	1
70	1
71	1
72	1
73	2
74	1
75	2
76	2
77	1
78	1
79	2
82	1
88	2
89	1
94	1
98	1
99	1
101	1
103	1
105	1
111	1
112	1
119	1
123	1
125	1
128	1
136	2
137	1
159	1
163	1
168	1
185	1
194	1
255	1
416	1