Adrian

Many thanks... Sent from my iPad > On 19 Aug 2015, at 00:36, d-j-e [email protected] wrote: > > Hi Adrian, > RedDog is loaded to Github with permissions set to...

Hello David, i am stuck again, here is the error message i get.. i managed to configure the pipelines but something is amiss as it aborts ... RedDog V1beta.4 -...

Hello David, this is how i have edited the RedDog_config.py file Essential pipeline variables. ''' reference = "/groups2/bronsvoort_grp/SOFTWARE/NC_002945.fna" #reference = "/full_path_to/pipeline_test_sets/reference/NC_007384_with_plasmid.gbk" sequences = "/groups2/bronsvoort_grp/SOFTWARE/trial/*.fastq.gz" #sequences = "/full_path_to/pipeline_test_sets/*.fastq.gz" #sequences = "/full_path_to/pipeline_test_sets/*.fastq.gz"...

hello David here are the contents of that file [amuwonge@ris-lx02 trial]$ ls -lh total 393M -rwxr-xr-x 1 amuwonge bronsvoort_grp 83M Aug 18 17:10 BBB01315ME_1.fastq.gz -rwxr-xr-x 1 amuwonge bronsvoort_grp 88M Aug...

hello David, it is the correct path i am using.. see below [amuwonge@ris-lx02 trial]$ pwd /groups2/bronsvoort_grp/SOFTWARE/trial On Mon, Aug 24, 2015 at 12:26 PM, d-j-e [email protected] wrote: > Those names...