Aditya Bandla

Is there any documentation/code for harvesting the 200,000 odd genomes from PATRIC & IMG? I am trying to build the database for using the conspecific module of MAGpurify

Thanks, Stephen! I was able to get the genome downloads going from PATRIC, however, I would also like to gather genomes from IMG to capture those described in https://www.nature.com/articles/s41588-017-0012-9

Stephen, that'd be great!

@snayfach Thanks! Can you please share it with [email protected] which links to my business Dropbox account?

@snayfach Stephen, thanks for making the nr genomes available. We were trying to build sketches for this set, but ran into a few issues. First, in supplementary table 9 (from...

We first tried removing the genome id's from the excel and then merging the excel & txt file based on the genome_name column, but duplicate genome names seem to be...

Thanks Stephen for looking into this and helping us out. It would be great to have the clustered genome id's if possible, since we are trying to replicate the database...

Is there a fix for this already?

@geronimp @wwood Is this repo still being actively maintained?

@geronimp Thanks! Congrats on the PhD, great to hear