Adam Tyson

We are likely moving to zarr to store the data (https://github.com/brainglobe/brainglobe-atlasapi/issues/562), and remove the concept of packaging the atlases, so this may be more feasible in the future. cc @IgorTatarnikov

#206 adds the brain atlas. Once merged, lets keep this open to track potentially adding the full body atlas. cc @PolarBean

Thanks @PolarBean, this does seem to be a long undiscovered error. @alessandrofelder, @viktorpm does the validation script check the hemisphere files?

Thanks @PolarBean! Bear with us, it might be a few days until we can review this.

> These are in the atlas file shared by the creator so I would say leave them (even though you are correct they are a mistake). The only other alternative...

> Yeah this is expected :) For instance you have layers 1, 2, 3 of some structure but only layers 1 and 3 are actually delineated. 2 can still exist...

I can see why it would be useful, but to add that information, we would need to change the API. Currently third party tools rely on e.g. a 1-2-1 mapping...

The relevant section is here: https://github.com/brainglobe/brainglobe.github.io/tree/main/docs/source/documentation/brainrender

Sphinx has some nice features for hosting examples. Might be worth looking into e.g. what we do with movement: - Website: https://github.com/brainglobe/brainglobe.github.io/tree/main/docs/source/documentation/brainrender - Source: https://github.com/neuroinformatics-unit/movement/tree/main/examples

probably brainrender/examples