Adam Tyson

@chaplinta, @simonweiler, this is the effort I mentioned on slack. Would an atlas refinement/packaging GUI be useful for you?

> Tests are currently not running mac-latest since I was having issues getting torch to behave on CI, see [here](https://github.com/brainglobe/cellfinder/actions/runs/9016187794/job/24772298500). I couldn't find an elegant way of forcing torch to...

@IgorTatarnikov I compared this PR with version 1.2.0 and the classification looks considerably worse. This was using the napari plugin, all parameters default, using the pre-trained model. The only other...

Also, if I try to run `pytest` locally, I get a huge stacktrace that leads to a keras error: `ModuleNotFoundError: No module named 'tensorflow'`

The classification problem seems to be resolved on that machine by deleting and re-downloading the model, not sure what's going on. > Also, if I try to run pytest locally,...

On my mac (m1), I get this error: > E NotImplementedError: Exception encountered when calling MaxPooling3D.call(). E E The operator 'aten::max_pool3d_with_indices' is not currently implemented for the MPS device. If...

After some more testing, everything seems to work fine on my mac, the only issue is automatically setting the backend to torch.

Is it worth getting rid of the other code in the init file now? There's not a lot of point setting the backend to torch, then checking whether it's TF...

I think this is ready to merge then @IgorTatarnikov unless there's anything else you want to do?

Hi @priya-velu5, could you attach the specific code you're running here? Also, do you see the same behaviour outside of VSCode?