Adam Coffman

Results 83 issues of Adam Coffman

We should update the scripts in the examples/ directory to ensure they work with the recent schema updates. We should also add some sort of test that runs them all...

When proposing a revision set, we track which revisions are newly created and which revisions previously existed. In the case when _all_ revisions already existed, no activity record should be...

This introduces schema support for regulatory fusions. Still todo before this can be merged: * modify algorithm for VICC compliant name to order partners based on which is the regulatory...

new-feature

This will be leveraged for SC-VCEP approval status as well as potentially FDA recognition status. - [x] Introduce a status field to Organizations indicating if they are allowed to endorse...

Sometimes, multiple publications can rely on the same underlying data, clinical trial, or patients. In these cases we do not want to capture duplicate evidence in CIViC just because there...

This will go through, once per month, and check to see if ClinVar ids are valid flagging variants that link to invalid ones. closes #1179

enhancement

For VCF files we currently provide two options "submitted and accepted" and just "accepted only." TSV downloads for EIDs and Assertions on the other hand are only accepted. We should...

For `v` Fusion partners, it may be useful to curate Genes that have appeared as the partner on either the feature or variant. This could just be a hang off...