aclum
aclum
to dos for after berkeley schema rollout - [ ] add description for slot names - [ ] update completeness and contamination slots to have a valid range of 0-100....
**Describe the bug** The workflow automation code for NMDC makes DataObject records and the code generates an invalid record, using 'None' where a permissible value is required. I curious how...
We just started using StructuredAliases in NMDC. The documentation and yaml does not match the examples and what gen-linkml will accept for this class Yaml https://github.com/linkml/linkml-model/blob/76bc3279981f00f9f6590caf7fbe5a1f15520f85/linkml_model/model/schema/meta.yaml#L2781 indicates `alias_predicate` is a...
NMDC would like a mapping file from KO to GO, what is currently provided on https://geneontology.org/docs/download-mappings/ for KEGG is only mapping of KEGG reactions to GO. cc @cmungall
A while ago we added `Metagenome HQMQ Bins Compression File` and `Metagenome LQ Bins Compression File` Existing records have been updated to `Metagenome HQMQ Bins Compression File` in https://github.com/microbiomedata/issues/issues/1084 now...
Make this required for all data_object_set records. Depends on: - [ ] https://github.com/microbiomedata/issues/issues/1175
see #1032 This is the ticket to implement UCUM for units of measurement within nmdc schema - [x] clarify what UCUM standard will be used (name, case sensitive symbol, case...
fix merge conflicts
The current range for curie is a string and there are mixed values, some with a prefix and some without so this will need an accompanying migration. bioregistry.io could be...
Is the range here still expected to be string? https://microbiomedata.github.io/nmdc-schema/igsn_identifiers/ I thought with the external identifiers everything was listed as a curie. If I go to Class biosample directly it...