alessandro

align two sequences

2

Hi! do you plan to add in the package the functionality to blast in R a "subject" multifasta and a "query" multifasta passed directly by the user? Bests, -A

ResolvePackageNotFound:

1

Dears, I followed the instructions and got this error on my Mac Monterey OS 12.5: ``` conda env create -f environment.yml Collecting package metadata (repodata.json): done Solving environment: failed ResolvePackageNotFound:...

Hi, I am on my macOS ventura 13.0.1. Followed the instructions and got: ``` make all ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit...

Dear, I am on my MacOS (Ventura 13.6) ``prokka`` does not find ``signalp`` with ``--gram`` option on ``` [10:32:32] Determined tbl2asn version is 025008 from 'tbl2asn 25.8 arguments:' [10:32:32] You...

Hi, always the same error. I tried both on my Mac (16 GB RAM) and on Unix server: ``` (base) abrozzi@MBP-di-Stefano ~ % docker run -v /Users/abrozzi/gvgh:/data phelimb/bigsi bigsi bulk_search...

read depth calculation

2

Hi, how each allele read depth is calculated? The read depth that I find in the output (column "depth") is the average of each one of the seven loci read...

find: ‘shell’: No such file or directory

2

**My Ubunbtu:** ```` lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 22.04.2 LTS Release: 22.04 Codename: jammy ```` **wget** and **tar** ```` sudo wget https://github.com/jorvis/ergatis/archive/refs/tags/v2r19b4.tar.gz sudo...

See latest issue

See latest issue

Hi Ryan! I start saying I am a beginner with PacBio data analysis. The raw data contain a deep hierarchy of directories and files. Which reads (files) from PacBio raw...