alessandro

Hi, I get the same error when I try with the `sample_data` provided in the installation folder ``` unicycler -1 /home/Unicycler/sample_data/short_reads_1.fastq.gz -2 /home/Unicycler/sample_data/short_reads_2.fastq.gz -o /home/Unicycler/testUni ``` ``` Saving /home/Unicycler/testUni/004_bridges_applied.gfa Traceback...

> testPG > testPG

I solved specifying the -c parameter: ``` -c sequence identity threshold, default 0.9 this is the default cd-hit's "global sequence identity" calculated as: number of identical amino acids in alignment...

Hi, in the body of function `read_pileup_data` (LINE 314 of `srst2.py`) the following lines: `allele_line = 1 # Keep track of line for this allele` `allele_line += 1` `avg_depth =...

Still error: ``` sudo make install Manifying 1 pod document mkdir -p /opt/ergatis/docs mkdir -p /opt/ergatis/docs/documentation mkdir -p /opt/ergatis/samples Installing samples find -type f -exec install {} /opt/ergatis/samples \; Installing...