Anthony Bretaudeau

Results 24 issues of Anthony Bretaudeau

Hello, I've made a conda package for dgenies (https://github.com/bioconda/bioconda-recipes/pull/21621). I have one problem with it: the configuration directory gets installed in $PATH_TO_CONDA_ENV/lib/python3.6/site-packages/etc/dgenies/ And it seems like [there is not way...

#### What is the problem you are having with rclone? I'd like to use `rclone copy` to download some data from an sftp server (tested with https://hub.docker.com/r/atmoz/sftp), but I get...

enhancement
Remote: SFTP

**Are you using the latest release?** yes, 1.8.15 from conda **Describe the bug** Running `funannotate annotate` command with an interproscan.xml input file, I get this error: ``` [Apr 25 02:04...

Currently, in legacy mode, setup_data_libraries calls JobsClient.get_jobs() to get the list of jobs to wait for completion. This call can be veeeery long depending on the number of jobs of...

https://biocontainers.pro/#/multipackage is cool, but it's not clear what to do when you have selected your favorite packages. It would be good to write where to make the pull request when...

Not sure if it's real/reproducible: people created a few accounts, unlocked them (but they didn't logout/login #297), they added their galaxy api key, logout/login => no galaxy upload available in...

bug

Related to #191 It would be good to use something like celery and redis to enqueue long running tasks like sparql query or data loading. We could have a scalable...

enhancement

For positionable entities, it would be cool to be able to save query results in BED format (and perhaps GFF too, but it's probably much harder) I have no idea...

enhancement

When we have something stable enough, on a proper askomics website

documentation