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finished abnormally, err code: -9

Open marina-vn opened this issue 2 years ago • 3 comments

Description of bug

== Error == system call for: "['/soft/SPAdes-3.13.0-Linux/bin/spades-hammer', '/scr/manuel/Marina_scr/seq_TS/otros/SPADES_TS_oct/corrected/configs/config.info']" finished abnormally, err code: -9

spades.log

spades.log

params.txt

params.txt

SPAdes version

SPAdes v 3.13.0

Operating System

Linux-4.4.179-99-default-x86_64-with-SuSE-42.3-x86_64

Python Version

3.7.9

Method of SPAdes installation

conda

No errors reported in spades.log

  • [X] Yes

marina-vn avatar Jun 03 '22 11:06 marina-vn

Hello

Your SPAdes job was killed. Likely more information could be found in the system log

PS: The latest version of SPAdes is 3.15.4

asl avatar Jun 03 '22 11:06 asl

The log says what I have written in the "bug description"

marina-vn avatar Jun 03 '22 11:06 marina-vn

I was talking about "system log" not spades.log. You might want to contact your server administrator for the help

asl avatar Jun 03 '22 11:06 asl