No output; system call finished abnormally, OS return value: -15

[joannakaczorowska]

Hi! I'm using SPAdes for a while already, and until today it worked perfectly. I use it to assemble genomes of small viruses (less than 5kb) from enriched samples. I use --careful and --only-assembler settings. Sadly, today I got an error, and I did not obtain neither scaffolds.fasta nor contigs.fasta files. I wondered what's wrong, since the reads are good quality (comparable with other samples from the same batch, that worked in the SPAdes).

I tried to re-run the analysis (--restart-from as) also with --disable-gzip-output flag (I saw it in one of the threads and wondered whether it may help), but still got no result (no scaffolds.fasta).

Below, I share with you the spades.log from the first run (not the re-run).

spades.log

Looking forward to your answer. Thank you! Best, Joanna