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Assertion `nucls.size() >= index.k()' failed.

Open sofiaorellanar-boop opened this issue 1 month ago • 2 comments

Description of bug

I am assembling a genome and I got multiple error and warnings. I would appreciate if someone could help me understand what they mean.

spades.log

spades.log

params.txt

params.txt

SPAdes version

4.2.0

Operating System

Linux-5.15.0-143

Python Version

3.13.2

Method of SPAdes installation

binary

No errors reported in spades.log

  • [x] Yes

sofiaorellanar-boop avatar Nov 07 '25 17:11 sofiaorellanar-boop

This likely indicates some memory corruption as one of internal SPAdes data structure invariants was violated. Does restart yields the same error?

asl avatar Nov 07 '25 17:11 asl

This likely indicates some memory corruption as one of internal SPAdes data structure invariants was violated. Does restart yields the same error?

Thank you for the answer! Sadly it does, I restarted it and I got the same error.

sofiaorellanar-boop avatar Nov 10 '25 21:11 sofiaorellanar-boop