finished abnormally, OS return value: 11
Description of bug
Hello, I have tried to run SPAdes to assemble illumina short reads, I have use default parameters and used mem=250G, CPUS(thread)=32. However, the high computetional resources I used, I received the error message "finished abnormally, OS return value: 11" and the run stopped. I am wondering if you could help. I posted spades log file if it can support. Below is the error code in the spades.log file.
== Error == system call for: "['/home/tower/anaconda3/envs/get_amd3_re/share/spades-3.13.0-0/bin/spades-core', '/home/tower/Desktop/test/muris_1_re/extended_spades/K55/configs/config.info']" finished abnormally, err code: -11
spades.log
params.txt
SPAdes version
v.3.13.0
Operating System
Linux-5.14.0
Python Version
python 3.8.10
Method of SPAdes installation
conda
No errors reported in spades.log
- [x] Yes
You're using terrible old version of SPAdes. Does the problem reproduce with the recent 4.1?
I'm currently analyzing some parasite data. Unfortunately current versions of SPAdes didn't assemble my data successfully. This is the reason I'm using an old version of SPAdes. And wrote the wrong version. It's 3.13.0. My mistake 🥲 sorry.