ablab
stuck in running spades-hammer
Description of bug
I first try spades using spades.py --test, the outputs are like the following:
== Running: /home/.../.conda/envs/.../bin/spades-hammer /home/.../spades_result/corrected/configs/config.info
== Error == system call for: "['/home/.../.conda/envs/.../bin/spades-hammer', '/home/.../spades_result/corrected/configs/config.info']" finished abnormally, OS return value: -9 None
There is no any running details that I observe in other issues. Can you help me work it out?
spades.log
params.txt
SPAdes version
4.0.0
Operating System
Linux-3.10.0-957.el7.x86_64-x86_64-with-glibc2.17
Python Version
3.11.0
Method of SPAdes installation
conda install -c bioconda -c conda-forge spades -y
No errors reported in spades.log
- [x] Yes
Looks like it crashed straight at the launch. I suspect there is incompatibility between your system and conda pre-built binaries. We do not maintain these packages, I would suggest you to contact conda for this
