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Published 20 hours ago • verified publisher icon ablab

error while parsing GFA path record

Open IanDMedeiros opened this issue 7 months ago • 8 comments

Description of bug

binspreader threw an error while parsing assembly_graph_with_scaffolds.gfa. It looks like there are semicolons where the program was expecting tabs. I did not modify the assembly graph in any way after the assembly.

spades.log

binspreader.60.log

There was no spades.log file I can find from this run. I am attaching the log output from the hpc job.

params.txt

There was no params.txt file for this run.

SPAdes version

4.0.0

Operating System

Linux Rocky 8.9

Python Version

3.11.4

Method of SPAdes installation

binaries

No errors reported in spades.log

  • [X] Yes

IanDMedeiros avatar Jul 23 '24 20:07 IanDMedeiros