spades-ionhammer terminates abnormally, OS return value: -6

[ejfresch]

Description of bug

Trying to assemble IonTorrent data.

I launched SPAdes like this: spades.py -s /mnt/z/WGS_diphtheria/test/k7rj4.fastq -o /mnt/e/L_drive/projects/ecdc_cdiphtheriae/k7rj4 --iontorrent

I get the following error:

[...]
0:02:29.794  1491M / 4331M INFO    General    (normal_quality_model.hpp  : 459)   NonGenomic dist: -0.438594 0.0718578
0:02:29.812  1350M / 4331M INFO    General     (main.cpp                  : 159)   Subclustering.
terminate called recursively
terminate called recursively
terminate called recursively
terminate called after throwing an instance of 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::math::evaluation_error> >'
terminate called recursively

== Error ==  system call for: "['/home/luca/miniconda3/envs/flye/bin/spades-ionhammer', '/mnt/e/L_drive/projects/ecdc_cdiphtheriae/k7rj4/corrected/configs/ionhammer.cfg']" finished abnormally, OS return value: -6
None  

• I used the conda package and I get the error shown above. I also tried to compile from source. Same error.
• I tried another input file (fastq, IonTorrent data, different isolate from a different lab). Same error.

spades.log

spades.log

params.txt

params.txt

SPAdes version

3.15.5

Operating System

Linux-4.4.0-17763-Microsoft-x86_64-with-glibc2.31

Python Version

3.10.10

Method of SPAdes installation

conda. Also tried to compile from source code and got the same error

No errors reported in spades.log

• [X] Yes