libraries and dependencies

[Aline-Git]

Thanks for this great tool ! I'm running Quast on aws instance ubuntu 22.04 with python 3.10. I created a conda environment where I installed manually Quast v5.2 (full install) by following the instructions on git. I would like to use the --conserved-genes-finding (BUSCO) option with Quast. Unfortunately it seems to require a library (libdn11) which is not present in ubuntu 22.04. I even tried to install this version, http://nz2.archive.ubuntu.com/ubuntu/pool/main/o/openssl/libssl1.1_1.1.1f-1ubuntu2.16_amd64.deb, but it did not work. I still get the same error messages :

‘/home/ubuntu/programs/quast/quast_libs/blast/tblastn: error while loading shared libraries: libidn.so.11: cannot open shared object file: No such file or directory’ quast_5.2_ubuntu22_20221222.log run_Assembly_ubuntu22_20221222.log

Is it possible to run quast on ubuntu 22.04 ?

(edit :) I finally installed quast 5.0.2 via conda on an ubuntu 20.04 instance (with python 3.8), I had accessions problem with the manually installes 5.2 version.

‘WARNING: Permission denied accessing /home/ubuntu/programs/quast/quast_libs/minimap2. Did you forget sudo?’

I downloaded the BUSCO files like it was advised for issue #185 and now it's working fine. Tanks !

Aline

quast_5.2_ubuntu20_20221226.log