Amandine Velt

Ok, I compiled bwa-mem2 with gcc version 7.3.1 20180303 and it works, thank you. So I used this bwa-mem2 binary for the generation of the index and the alignment. Generation...

Sorry, I forgot to give you the datasets ! Here are the two fasta files : [files](https://filesender.renater.fr/?s=download&token=1dd9160c-a755-4c32-ad80-2980dae2486a) Thank you for your help, Amandine

Hi, Do you have any idea for solving this problem? Thank you in advance, Have a nice day Amandine

Hi ! Yes I found the problem ! I used OPERA to perform scaffolding of my Sanger assembly with PacBio reads and I saw that OPERA merged some contigs, generating...

I allow myself to re-write because I just noticed a problem with the removeNestedHaplotigs script. The script considers my haplotig 000000F_001 to be nested. Now, it is just overlapping on...

Hi Sarah, Please, allow me to reiterate my question about haplotig overlaps, because I have 29% of my haplotigs which are included in an overlap (small overlap) and I don't...

Ok, I launched ./Configure with these two options, then I launched the make and make install and now, "perlbrew use" command works ! Thank you very much and have a...

Sorry to write again, but I have installed cpanminus : > curl -L https://cpanmin.us | perl - App::cpanminus And when I type "perlbrew list-modules", I have: > /cm/shared/apps/Perl_environment/bin/perlbrew: Perl lib...