PycoQC fails when fastq is trimmed using Pychopper.

[bernardo-heberle]

Hello,

PycoQC exits with an error when I use it in with a bam file generated from a fastq file that was trimmed using Pychopper. When I do not use Pychopper PycoQC works fine.

Here is a file containing the error message displayed by PycoQC: pycoQC_error_pychopper.txt

I was wondering if you have ever had someone run into a similar issue before and know of a simple solution? If not I can provide a small test dataset and more details to help try to get to the reason behind this issue.

Thank you for your time.