NanoCount

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Hi Josie, I'm wondering that whether I can obtain the reads counts for gene by directly mapping reads to sequence from the whole gene locus instead of transcripts (minimap2 -ax...

kerenzhou062

Hi @josiegleeson, Regarding a previously closed issue: https://github.com/a-slide/NanoCount/issues/24 You mentioned that you use round() command in R to convert 'est_count' values to integers for downstream analysis like Deseq2 Does that...

Stakaitis

Latest version is not on pypi, please publish

1

I noticed that your latest release 1.1.0 is not on pypi

corneliusroemer

NanoCount MIN_QUERY_FRACTION_ALIGNED parameter default setting

1

Hi, @josiegleeson Thank you for developing NanoCount . I would like to know why MIN_QUERY_FRACTION_ALIGNED default setting is 0.5 ? The reason why I asked this question is that I...

kir1to455