Zulko

Sorry for the delay. Thanks a lot for this that looks really good!! The one thing I am not sure I understand is the deploy.sh which, how is it used?...

> How could we get the value of the estimated time left until rendering is finished I don't believe Proglog enables this for now, two possible ways to solve this...

Thank you so, so much for all this!! I am taking a look but it will take time! At first sight this looks like a tremendous improvement though :+1:

Update to say I still haven't had time to look through deeper, but I am taking a week off work next week and this will be high on my todo...

Note that while the error says "file not found", it could be the BLAST program itself that is actually not found. Did you install BLAST on your computer and so...

I don't know how this compares to PyDNA, but you can get restriction figures with [BandWagon](https://github.com/Edinburgh-Genome-Foundry/BandWagon) (see [plotting a gel simulation](https://github.com/Edinburgh-Genome-Foundry/BandWagon#plotting-a-gel-simulation)), and you can use [Bandwitch](https://github.com/Edinburgh-Genome-Foundry/Bandwitch) to automatically select enzymes...

The error is saying that the end of the sequence 8851 is incompatible with the assembly overhang selector `dw.TmSegmentSelector(min_tm=55, max_tm=65)`, probably because the sequence's end is GC rich and so...

>Guessing DNAweaver is the equivalent for the best Gibson cut points Note that Weaver also supports golden gate assembly, but not as thoroughly as GoldenHinges as it's just not it's...

I realize now that this project has a very little documentation on how it works internally , it would be worth adding a link to this (very long!) presentation in...

Sorry for the lack of documentation. See [slides 221-225 here](https://github.com/Edinburgh-Genome-Foundry/egf-shared-documents/blob/master/slideshows/dnaweaver_presentation_iwbda_2019/talk_long.pdf). When you use the coarse-grain/fine-grain decomposition approach, there is a first quick sequence decomposition to find _good cuts_, then a...