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Published 20 hours ago • verified publisher icon Zhong-Lab-UCSD

Is is possible to load reference annotation as gtf or gff from gencode/ensembl?

Open LucoLab opened this issue 7 years ago • 1 comments

Is add_geneAnnot.sh only working with UCSC annotation ?

LucoLab avatar Feb 28 '18 23:02 LucoLab

Unfortunately GFF/GTF files are not supported yet. Currently only UCSC annotation format or plain BED format is supported. We are exploring the possibility of including GFF/GTF support in upcoming updates.

caoxiaoyi03 avatar Mar 01 '18 22:03 caoxiaoyi03