Zhenyu Zhang

I got similar error here "[fetch_refcache:94] Error, cannot retrieve reference" not chr1 though. It errors out in either HPV-mCG2 or HPV-mCG3 or both in the GDC reference genome https://gdc.cancer.gov/about-data/data-harmonization-and-generation/gdc-reference-files Modification...

just curious, is deTin model already part of the GATK4 MuTect2 algorithm, or it has not been integrated yet?

@bilalbaqar @Shenglai do you want to merge this?